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If you want to burn your programs (.hex files) into your microcontrollers from Windows using the PICkit2 but without the need of MPLAB, you can do it using the PICkit2 software programmer. It's a simple program that allows you to choose a .hex file and burn it directly in the microcontroller using a PICkit2 connected by USB.
To burn a program (stored in a .hex file) into your microcontroller...
Sometimes the verification fails, but the program is properly burnt anyway.
You usually don't need to do this, but if you want to retrieve the full program stored in the microcontroller...
Once you have your program burnt into the microcontroller, you can power your circuit from the PICkit2, so the program will start running:
As long as the "On" checkbox is checked, yout circuit will be powered at the voltage you've just specified.